Stem-loop bta-mir-329b

Accession

MI0009802

Description

Bos taurus bta-mir-329b precursor miRNA

Literature search

3 open access papers mention bta-mir-329b
(4 sentences)

Sequence

58043 reads, 38.0 reads per million, 279 experiments

ugguaccugaagaGAGGUUUUCUGGGUUUCUGUUUCuuuaaugaggaugaAACACACCUGGUUAACCUCUUUuccaguaucaa
((((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..)))))).

Structure

-      cu           UU      UUC      u  aa 
 ugguac  gaagaGAGGUU  CUGGGU   UGUUUC uu  u
 ||||||  |||||||||||  ||||||   |||||| ||   
 acuaug  cuUUUCUCCAA  GGUCCA   ACAAag ag  g
a      ac           UU      --C      u  ga 

Annotation confidence High

Genome context

21: 65917144-65917226 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from bta-mir-329b

Mature bta-miR-329b-5p

• Accession: MIMAT0009289
• Description: Bos taurus bta-miR-329b-5p mature miRNA
• Sequence: 14 - GAGGUUUUCUGGGUUUCUGUUUC - 36
• Evidence: experimental ; cloned [3]

Mature bta-miR-329b-3p

• Accession: MIMAT0050852
• Description: Bos taurus bta-miR-329b-3p mature miRNA
• Sequence: 51 - AACACACCUGGUUAACCUCUUU - 72
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125