Stem-loop bta-mir-1-1

Accession

MI0009719

Description

Bos taurus bta-mir-1-1 precursor miRNA

Literature search

37 open access papers mention bta-mir-1-1
(152 sentences)

Sequence

2677420 reads, 558.0 reads per million, 306 experiments

gcuugggaaACAUACUUCUUUAUGUGCCCAUAuggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUAUuucagg
.(((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))

Structure

g       a                GC     ---   a 
 cuuggga ACAUACUUCUUUAUGU  CCAUA   ugg c
 ||||||| ||||||||||||||||  |||||   ||| c
 ggacuuU UGUAUGAAGAAAUGUA  GGUau   auc u
-       A                -A     cga   g 

Annotation confidence High

Genome context

13: 54745908-54745983 [-]

Mature bta-miR-1-1-5p

• Accession: MIMAT0050807
• Description: Bos taurus bta-miR-1-1-5p mature miRNA
• Sequence: 10 - ACAUACUUCUUUAUGUGCCCAUA - 32
• Evidence: experimental ; cloned [3]

Mature bta-miR-1-3p

• Accession: MIMAT0009214
• Description: Bos taurus bta-miR-1-3p mature miRNA
• Sequence: 49 - UGGAAUGUAAAGAAGUAUGUAU - 70
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125