Stem-loop rno-mir-133a-1

Accession

MI0000906

Description

Rattus norvegicus rno-mir-133a-1 precursor miRNA

Literature search

277 open access papers mention rno-mir-133a-1
(1346 sentences)

Sequence

48134338 reads, 53838.0 reads per million, 501 experiments

caaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcgccucuucaauggaUUUGGUCCCCUUCAACCAGCUGuagcuaugcauuga
((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).

Structure

-      uuu    a       AA  U  A        gccuc 
 caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 

Annotation confidence High

Genome context

chr18: 2052478-2052564 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-133a-1

Mature rno-miR-133a-1-5p

• Accession: MIMAT0017124
• Description: Rattus norvegicus rno-miR-133a-1-5p mature miRNA
• Sequence: 15 - AGCUGGUAAAAUGGAACCAAAU - 36
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-133a-1-3p

• Accession: MIMAT0000839
• Description: Rattus norvegicus rno-miR-133a-1-3p mature miRNA
• Sequence: 52 - UUUGGUCCCCUUCAACCAGCUG - 73
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249