Stem-loop bta-mir-152

Accession

MI0009748

Description

Bos taurus bta-mir-152 precursor miRNA mir-148

Gene
family

RF00248; mir-148

Literature search

81 open access papers mention bta-mir-152
(573 sentences)

Sequence

3300911 reads, 1097.0 reads per million, 320 experiments

uguccucccggcccAGGUUCUGUGAUACACUCCGACUcgggcucuggagcagUCAGUGCAUGACAGAACUUGGgcccggacggacc
.(((((((.((((((((((((((.((.((((..((((...(((....))))))))))).)).)))))))))))))).))).)))).

Structure

u    -   c              G  A    CC    cgg   c 
 gucc ucc ggcccAGGUUCUGU AU CACU  GACU   gcu u
 |||| ||| |||||||||||||| || ||||  ||||   |||  
 cagg agg ccgGGUUCAAGACA UA GUGA  CUga   cga g
c    c   c              G  C    --    ---   g 

Annotation confidence High

Genome context

19: 38444475-38444560 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-152

Mature bta-miR-152-5p

• Accession: MIMAT0060989
• Description: Bos taurus bta-miR-152-5p mature miRNA
• Sequence: 15 - AGGUUCUGUGAUACACUCCGACU - 37
• Evidence: experimental ; cloned [3]

Mature bta-miR-152-3p

• Accession: MIMAT0009238
• Description: Bos taurus bta-miR-152-3p mature miRNA
• Sequence: 53 - UCAGUGCAUGACAGAACUUGG - 73
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125