Stem-loop bta-mir-21

Accession

MI0004742

Description

Bos taurus bta-mir-21 precursor miRNA mir-21

Gene
family

RF00658; mir-21

Literature search

60 open access papers mention bta-mir-21
(325 sentences)

Sequence

1853230 reads, 17881 reads per million, 78 experiments

ugucgggUAGCUUAUCAGACUGAUGUUGACUguugaaucucauggcAACAGCAGUCGAUGGGCUGUCUgaca
((((((((((((((((.(((((.(((((.((((.((...))))))))))).)))))))))))))))))))))

Structure

                A     A     A    u  a 
ugucgggUAGCUUAUC GACUG UGUUG CUgu ga  
|||||||||||||||| ||||| ||||| |||| || u
acagUCUGUCGGGUAG CUGAC ACAAc ggua cu  
                -     G     -    -  c 

Annotation confidence High

Genome context

chr19: 11138471-11138542 [+]

Mature bta-miR-21-5p

• Accession: MIMAT0003528
• Description: Bos taurus bta-miR-21-5p mature miRNA
• Sequence: 8 - UAGCUUAUCAGACUGAUGUUGACU - 31
• Evidence: experimental ; cloned [1-3]

Mature bta-miR-21-3p

• Accession: MIMAT0003745
• Description: Bos taurus bta-miR-21-3p mature miRNA
• Sequence: 47 - AACAGCAGUCGAUGGGCUGUCU - 68
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988


3. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343