Stem-loop bta-mir-542

Accession

MI0012214

Description

Bos taurus bta-mir-542 precursor miRNA

Literature search

28 open access papers mention bta-mir-542
(174 sentences)

Sequence

628390 reads, 186.0 reads per million, 314 experiments

augcacagaccucagacaucUCGGGGAUCAUCAUGUCACGAGAUaccacugugcacUUGUGACAGAUUGAUAACUGAAAggucugggagccgcucau
..((...(..(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))..).))....

Structure

--au  aca ac       auc    GG    UCA         -A   c 
    gc   g  cucagac   UCGG  AUCA   UGUCACGAG  Uac a
    ||   |  |||||||   ||||  ||||   |||||||||  |||  
    cg   c  gggucug   AGUC  UAGU   ACAGUGUUc  gug c
uacu  --c ga       gAA    AA    UAG         ac   u 

Annotation confidence High

Genome context

X: 18237439-18237535 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from bta-mir-542

Mature bta-miR-542-5p

• Accession: MIMAT0013594
• Description: Bos taurus bta-miR-542-5p mature miRNA
• Sequence: 21 - UCGGGGAUCAUCAUGUCACGAGAU - 44
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bta-miR-542-3p

• Accession: MIMAT0061040
• Description: Bos taurus bta-miR-542-3p mature miRNA
• Sequence: 57 - UUGUGACAGAUUGAUAACUGAAA - 79
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026