Stem-loop bta-mir-362

Accession

MI0009811

Description

Bos taurus bta-mir-362 precursor miRNA

Literature search

4 open access papers mention bta-mir-362
(5 sentences)

Sequence

749 reads, 43 reads per million, 73 experiments

cucgAAUCCUUGGAACCUAGGUGUGAGUgcuguucuagugcAACACACCUAUUCAAGGAUUCaaa
...(((((((((((...((((((((.((((((...))))))..)))))))))))))))))))...

Structure

cuc           ACC        -A      u 
   gAAUCCUUGGA   UAGGUGUG  GUgcug  
   |||||||||||   ||||||||  |||||| u
   CUUAGGAACUU   AUCCACAC  cgugau  
aaa           ---        AA      c 

Annotation confidence High

Genome context

chrX: 93947354-93947418 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-362

Mature bta-miR-362-5p

• Accession: MIMAT0009298
• Description: Bos taurus bta-miR-362-5p mature miRNA
• Sequence: 5 - AAUCCUUGGAACCUAGGUGUGAGU - 28
• Evidence: experimental ; cloned [4]

Mature bta-miR-362-3p

• Accession: MIMAT0012548
• Description: Bos taurus bta-miR-362-3p mature miRNA
• Sequence: 42 - AACACACCUAUUCAAGGAUUC - 62
• Evidence: experimental ; cloned [3-4]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125