Stem-loop bta-mir-382

Accession

MI0009822

Description

Bos taurus bta-mir-382 precursor miRNA

Literature search

35 open access papers mention bta-mir-382
(116 sentences)

Sequence

379218 reads, 157.0 reads per million, 308 experiments

uacuugaagaGAAGUUGUUCGUGGUGGAUUCGcuuuacuuaugacgAAUCAUUCACGGACAACACUUUUuucagua
((((.(((((((.(((((((((((..(((((((.........).))))))..)))))))))))..)))))))))))

Structure

    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuUUUU  CAACAGGCACU  CUAAgc g   u
    -       CA           UA      a uau 

Annotation confidence High

Genome context

21: 65943525-65943600 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from bta-mir-382

Mature bta-miR-382-5p

• Accession: MIMAT0009308
• Description: Bos taurus bta-miR-382-5p mature miRNA
• Sequence: 11 - GAAGUUGUUCGUGGUGGAUUCG - 32
• Evidence: experimental ; Array [3], qRT-PCR [3], cloned [4]

Mature bta-miR-382-3p

• Accession: MIMAT0061012
• Description: Bos taurus bta-miR-382-3p mature miRNA
• Sequence: 47 - AAUCAUUCACGGACAACACUUUU - 69
• Evidence: experimental ; Array [3], qRT-PCR [3], cloned [4]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125