Stem-loop bta-mir-3432a-2

Accession

MI0014501

Description

Bos taurus bta-mir-3432a-2 precursor miRNA mir-3432

Gene
family

RF03767; mir-3432

Literature search

3 open access papers mention bta-mir-3432a-2
(4 sentences)

Sequence

4245 reads, 22 reads per million, 66 experiments

aaacagccgacguugcggcaUGCGGGAUCUUUAGUUGUGGUGugugaauucuuaguugcagcaacuaaagaucccucaggcugcaaugaagaucaga
.......(..(((((((((.((.(((((((((((((((.((...(((....)))...)).))))))))))))))).)).)))))))))..)......

Structure

aaacagc ga         a  C               G  Gug   a 
       c  cguugcggc UG GGGAUCUUUAGUUGU GU   uga u
       |  ||||||||| || ||||||||||||||| ||   |||  
       g  guaacgucg ac cccuagaaaucaacg cg   auu u
-agacua aa         g  u               a  uug   c 

Annotation confidence High

Comments

Jin et al. predicted this miRNA bioinformatically in [1], and validated its expression by qPCR in [2].

Genome context

chr25: 34580890-34580986 [-]

Mature bta-miR-3432a

• Accession: MIMAT0017396
• Description: Bos taurus bta-miR-3432a mature miRNA
• Sequence: 21 - UGCGGGAUCUUUAGUUGUGGUG - 42
• Evidence: experimental ; qPCR [2], Illumina [3]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 20423511
   Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development
   Jin W, Dodson MV, Moore SS, Basarab JA, Guan LL
   BMC Mol Biol (2010) 11:29


3. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026