Stem-loop mmu-mir-23b

Accession

MI0000141

Symbol

MGI: Mir23b

Description

Mus musculus mmu-mir-23b precursor miRNA

Literature search

102 open access papers mention mmu-mir-23b
(373 sentences)

Sequence

545958 reads, 2143 reads per million, 107 experiments

ggcugcuuGGGUUCCUGGCAUGCUGAUUUgugacuugagauuaaaAUCACAUUGCCAGGGAUUACCacgcaacc
((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))

Structure

  c   u   --          -  C      gugacu 
gg ugc uGG  GUUCCUGGCA UG UGAUUU      u
|| ||| |||  |||||||||| || ||||||       
cc acg aCC  UAGGGACCGU AC ACUAaa      g
  a   c   AU          U  -      auuaga 

Annotation confidence High

Genome context

chr13: 63300484-63300557 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from mmu-mir-23b

Mature mmu-miR-23b-5p

• Accession: MIMAT0016980
• Description: Mus musculus mmu-miR-23b-5p mature miRNA
• Sequence: 9 - GGGUUCCUGGCAUGCUGAUUU - 29
• Evidence: experimental ; Illumina [6]

Mature mmu-miR-23b-3p

• Accession: MIMAT0000125
• Description: Mus musculus mmu-miR-23b-3p mature miRNA
• Sequence: 46 - AUCACAUUGCCAGGGAUUACC - 66
• Evidence: experimental ; cloned [1,3-4], Illumina [5-6]

References

1. PubMed ID: 12554860
   Numerous microRNPs in neuronal cells containing novel microRNAs
   "Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G"
   "RNA (2003) 9:180-186


2. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


3. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


4. PubMed ID: 15538371
   A pancreatic islet-specific microRNA regulates insulin secretion
   "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
   "Nature (2004) 432:226-230


5. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


6. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009