Stem-loop bta-mir-500

Accession

MI0009851

Description

Bos taurus bta-mir-500 precursor miRNA

Literature search

12 open access papers mention bta-mir-500
(42 sentences)

Sequence

488919 reads, 302.0 reads per million, 321 experiments

gcucccccucucUAAUCCUUGCUACCUGGGUGAGAGUgcuuucugaaugcaAUGCACCUGGGCAAGGAUUCUGAGagagggagc
((((((.(((((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))))).))))))

Structure

      c     -U         UAC       AGAG   uuu 
gcuccc cucuc  AAUCCUUGC   CUGGGUG    Ugc   c
|||||| |||||  |||||||||   |||||||    |||   u
cgaggg gaGAG  UUAGGAACG   GGUCCAC    acg   g
      a     UC         ---       -GUA   uaa 

Annotation confidence High

Genome context

X: 87737926-87738009 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-500

Mature bta-miR-500-5p

• Accession: MIMAT0009337
• Description: Bos taurus bta-miR-500-5p mature miRNA
• Sequence: 13 - UAAUCCUUGCUACCUGGGUGAGAGU - 37
• Evidence: experimental ; cloned [3-4]

Mature bta-miR-500-3p

• Accession: MIMAT0061023
• Description: Bos taurus bta-miR-500-3p mature miRNA
• Sequence: 52 - AUGCACCUGGGCAAGGAUUCUGAG - 75
• Evidence: experimental ; cloned [3-4]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125