Stem-loop bta-mir-539

Accession

MI0009857

Description

Bos taurus bta-mir-539 precursor miRNA

Literature search

11 open access papers mention bta-mir-539
(48 sentences)

Sequence

51478 reads, 33.0 reads per million, 294 experiments

auacuugaGGAGAAAUUAUCCUUGGUGUGUucgcuuuauuugggaugaaucAUACAAGGACAAUUUCUUUCUGaguau
(((((((.(((((((((.((((((.(((((((((((.....))).)))).)))))))))).))))))))).)))))))

Structure

       a         A      G    -    -   u 
auacuug GGAGAAAUU UCCUUG UGUG Uucg cuu a
||||||| ||||||||| |||||| |||| |||| ||| u
uaugaGU UUUCUUUAA AGGAAC AUAc aagu ggg u
       C         C      -    u    a   u 

Annotation confidence High

Genome context

21: 65935007-65935084 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from bta-mir-539

Mature bta-miR-539-5p

• Accession: MIMAT0009342
• Description: Bos taurus bta-miR-539-5p mature miRNA
• Sequence: 9 - GGAGAAAUUAUCCUUGGUGUGU - 30
• Evidence: experimental ; cloned [3]

Mature bta-miR-539-3p

• Accession: MIMAT0050878
• Description: Bos taurus bta-miR-539-3p mature miRNA
• Sequence: 52 - AUACAAGGACAAUUUCUUUCUG - 73
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125