Stem-loop bta-mir-504

Accession

MI0009855

Description

Bos taurus bta-mir-504 precursor miRNA mir-504

Gene
family

RF00939; mir-504

Literature search

24 open access papers mention bta-mir-504
(84 sentences)

Sequence

87007 reads, 60.0 reads per million, 309 experiments

gcugcuguugggAGACCCUGGUCUGCACUCUGUCuguaugcuuacugaAGGGAGCGCAGGGCAGGGUUUCccauacagagggc
(((.((((((((((((((((.(((((.((((.((.(((....))).))..)))).))))).)))))))))))).))))..)))

Structure

   -g    -            G     A    -G  u   u 
gcu  cugu ugggAGACCCUG UCUGC CUCU  UC gua g
|||  |||| |||||||||||| ||||| ||||  || |||  
cgg  gaca accCUUUGGGAC GGACG GAGG  ag cau c
   ga    u            G     C    GA  u   u 

Annotation confidence High

Genome context

gb|NKLS02002208.1|: 6428209-6428291 [+]

Mature bta-miR-504-5p

• Accession: MIMAT0009340
• Description: Bos taurus bta-miR-504-5p mature miRNA
• Sequence: 13 - AGACCCUGGUCUGCACUCUGUC - 34
• Evidence: experimental ; cloned [3]

Mature bta-miR-504-3p

• Accession: MIMAT0050876
• Description: Bos taurus bta-miR-504-3p mature miRNA
• Sequence: 49 - AGGGAGCGCAGGGCAGGGUUUC - 70
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125