Stem-loop bta-mir-338

Accession

MI0009805

Description

Bos taurus bta-mir-338 precursor miRNA mir-338

Gene
family

RF00686; mir-338

Literature search

5 open access papers mention bta-mir-338
(16 sentences)

Sequence

6632 reads, 105 reads per million, 69 experiments

gcacgggccguccuccccaacaauauccuggugcugagugaugacacacgcaacUCCAGCAUCAGUGAUUUUGUUGAagagggcagcugcca
(((...((.((((((..((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))..)))))).)))))..

Structure

--   cgg  c      cc      u   -         -   ga  a 
  gca   gc guccuc  caacaa auc cuggugcug agu  ug c
  |||   || ||||||  |||||| ||| ||||||||| |||  || a
  cgu   cg cgggag  GUUGUU UAG GACUACGAC Uca  gc c
ac   ---  a      aA      U   U         C   ac  a 

Annotation confidence Not enough data

Genome context

chr19: 52407324-52407415 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-338

Mature bta-miR-338

• Accession: MIMAT0009292
• Description: Bos taurus bta-miR-338 mature miRNA
• Sequence: 55 - UCCAGCAUCAGUGAUUUUGUUGA - 77
• Evidence: experimental ; cloned [3-4]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125