Stem-loop bta-mir-338

Accession

MI0009805

Description

Bos taurus bta-mir-338 precursor miRNA mir-338

Gene
family

RF00686; mir-338

Literature search

58 open access papers mention bta-mir-338
(221 sentences)

Sequence

209176 reads, 455.0 reads per million, 320 experiments

gcacgggccguccuccccAACAAUAUCCUGGUGCUGAGUgaugacacacgcaacUCCAGCAUCAGUGAUUUUGUUGAagagggcagcugcca
(((...((.((((((..((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))..)))))).)))))..

Structure

--   cgg  c      cc      U   -         -   ga  a 
  gca   gc guccuc  cAACAA AUC CUGGUGCUG AGU  ug c
  |||   || ||||||  |||||| ||| ||||||||| |||  || a
  cgu   cg cgggag  GUUGUU UAG GACUACGAC Uca  gc c
ac   ---  a      aA      U   U         C   ac  a 

Annotation confidence High

Genome context

19: 51569617-51569708 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-338

Mature bta-miR-338-5p

• Accession: MIMAT0050853
• Description: Bos taurus bta-miR-338-5p mature miRNA
• Sequence: 19 - AACAAUAUCCUGGUGCUGAGU - 39
• Evidence: experimental ; cloned [3-4]

Mature bta-miR-338-3p

• Accession: MIMAT0009292
• Description: Bos taurus bta-miR-338-3p mature miRNA
• Sequence: 55 - UCCAGCAUCAGUGAUUUUGUUGA - 77
• Evidence: experimental ; cloned [3-4]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125