Stem-loop rno-mir-126b

Accession

MI0015433

Description

Rattus norvegicus rno-mir-126b precursor miRNA

Literature search

70 open access papers mention rno-mir-126b
(585 sentences)

Sequence

198 reads, 1.0 reads per million, 79 experiments

gcacucccggugcugcgcuguugaccacgCAUUAUUACUCACGGUACGAGuuugaagugucacagCGCGUACCAAAAGUAAUAAUGUGcugucaccggcaaagacacggcuccaggcu
((.((.(((((.((..((((.((((..((((((((((((...((((((.((((((....))).))).))))))...))))))))))))..)))).))))..)))).)))....)))).

Structure

-  a  ---c   -  g  gc    u    ca            CAC      A   -   a 
 gc cu    ccg gu cu  gcug ugac  cgCAUUAUUACU   GGUACG Guu uga g
 || ||    ||| || ||  |||| ||||  ||||||||||||   |||||| ||| |||  
 cg ga    ggc ca ga  cggc acug  GUGUAAUAAUGA   CCAUGC Cga acu u
u  -  ccuc   a  -  aa    c    uc            AAA      G   c   g 

Annotation confidence Not enough data

Genome context

chr3: 4042464-4042581 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-126b

Mature rno-miR-126b-5p

• Accession: MIMAT0052031
• Description: Rattus norvegicus rno-miR-126b-5p mature miRNA
• Sequence: 30 - CAUUAUUACUCACGGUACGAG - 50
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-126b-3p

• Accession: MIMAT0017843
• Description: Rattus norvegicus rno-miR-126b-3p mature miRNA
• Sequence: 66 - CGCGUACCAAAAGUAAUAAUGUG - 88
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249