Stem-loop bta-mir-505

Accession

MI0009856

Description

Bos taurus bta-mir-505 precursor miRNA

Literature search

15 open access papers mention bta-mir-505
(90 sentences)

Sequence

182168 reads, 79.0 reads per million, 320 experiments

aaauugaugcacccaguggGGGAGCCAGGAAGUAUUGAUGUUucuaccaguuuagcGUCAACACUUGCUGGUUUCCUCUcuggagcguca
....((((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).))))))

Structure

aaau      ac    u           G    A        ucua 
    ugaugc  ccag ggGGGAGCCAG AAGU UUGAUGUU    c
    ||||||  |||| ||||||||||| |||| ||||||||    c
    acugcg  gguc CUCCUUUGGUC UUCA AACUGcga    a
----      -a    U           G    C        uuug 

Annotation confidence High

Genome context

gb|NKLS02002208.1|: 5196458-5196547 [+]

Mature bta-miR-505-5p

• Accession: MIMAT0050877
• Description: Bos taurus bta-miR-505-5p mature miRNA
• Sequence: 20 - GGGAGCCAGGAAGUAUUGAUGUU - 42
• Evidence: experimental ; cloned [3]

Mature bta-miR-505-3p

• Accession: MIMAT0009341
• Description: Bos taurus bta-miR-505-3p mature miRNA
• Sequence: 57 - GUCAACACUUGCUGGUUUCCUCU - 79
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125