Stem-loop rno-mir-126a

Accession

MI0000898

Description

Rattus norvegicus rno-mir-126a precursor miRNA

Literature search

67 open access papers mention rno-mir-126a
(594 sentences)

Sequence

6425259 reads, 5265 reads per million, 497 experiments

ugacagcaCAUUAUUACUUUUGGUACGCGcugugacacuucaaacUCGUACCGUGAGUAAUAAUGCGugguca
((((.((.(((((((((((.(((((((.....(((....)))....))))))).))))))))))).)).))))

Structure

    a  a           U       CGcug   c 
ugac gc CAUUAUUACUU UGGUACG     uga a
|||| || ||||||||||| |||||||     |||  
acug uG GUAAUAAUGAG GCCAUGC     acu c
    g  C           U       -Ucaa   u 

Annotation confidence High

Genome context

chr3: 4042488-4042560 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-126a

Mature rno-miR-126a-5p

• Accession: MIMAT0000831
• Description: Rattus norvegicus rno-miR-126a-5p mature miRNA
• Sequence: 9 - CAUUAUUACUUUUGGUACGCG - 29
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-126a-3p

• Accession: MIMAT0000832
• Description: Rattus norvegicus rno-miR-126a-3p mature miRNA
• Sequence: 46 - UCGUACCGUGAGUAAUAAUGCG - 67
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249