Stem-loop bta-mir-206

Accession

MI0009772

Description

Bos taurus bta-mir-206 precursor miRNA

Literature search

16 open access papers mention bta-mir-206
(93 sentences)

Sequence

657 reads, 65 reads per million, 5 experiments

ugcuucccaaggccacaugcuucuuuauauccccauacggauuacuuugcuaUGGAAUGUAAGGAAGUGUGUGGuuucggcgagcg
.((((.((.(((((((((((((((((((((..(((((((((....)))).))))).))))))))))))))))))))).)).)))).

Structure

u    c  a                     cc     -    u 
 gcuu cc aggccacaugcuucuuuauau  ccaua cgga u
 |||| || |||||||||||||||||||||  ||||| ||||  
 cgag gg uuuGGUGUGUGAAGGAAUGUA  GGUau guuu a
g    c  c                     -A     c    c 

Annotation confidence Not enough data

Genome context

chr23: 24353667-24353752 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-206

Mature bta-miR-206

• Accession: MIMAT0009260
• Description: Bos taurus bta-miR-206 mature miRNA
• Sequence: 53 - UGGAAUGUAAGGAAGUGUGUGG - 74
• Evidence: experimental ; Array [3], qRT-PCR [3], cloned [4]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125