Stem-loop bta-mir-452

Accession

MI0009838

Description

Bos taurus bta-mir-452 precursor miRNA mir-452

Gene
family

RF00839; mir-452

Literature search

19 open access papers mention bta-mir-452
(125 sentences)

Sequence

275675 reads, 104.0 reads per million, 316 experiments

gcuaagcacuuacAACUGUUUGCAGAGGAAACUGAGAcuuuguaacuauaucUCAGUCUCAUCUGCAAAGAAGUAagugcuuugc
((.((((((((((...(.((((((((.((.(((((((..(.......)..))))))).)).)))))))).).)))))))))).))

Structure

  u          AAC G        G  A       cu ug 
gc aagcacuuac   U UUUGCAGA GA ACUGAGA  u  u
|| ||||||||||   | |||||||| || |||||||  |  a
cg uucgugaAUG   A AAACGUCU CU UGACUcu  a  a
  u          --A G        A  C       au uc 

Annotation confidence High

Genome context

X: 34447971-34448055 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-452

Mature bta-miR-452-5p

• Accession: MIMAT0009324
• Description: Bos taurus bta-miR-452-5p mature miRNA
• Sequence: 14 - AACUGUUUGCAGAGGAAACUGAGA - 37
• Evidence: experimental ; cloned [3]

Mature bta-miR-452-3p

• Accession: MIMAT0061017
• Description: Bos taurus bta-miR-452-3p mature miRNA
• Sequence: 53 - UCAGUCUCAUCUGCAAAGAAGUA - 75
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125