miRBase entry: bta-mir-450a-1

Stem-loop bta-mir-450a-1


Accession
MI0012213
Description
Bos taurus bta-mir-450a-1 precursor miRNA
Gene family
MIPF0000128; mir-450

Literature search
5 open access papers mention bta-mir-450a-1
(7 sentences)

Sequence

3936 reads, 55 reads per million, 67 experiments
acuauUUUUGCGAUGUGUUCCUAAUAUgcaguauaaauauauugggagcauuuugcaugcaugguuuuguaucaauauacag
(((((...(((((.((((((((((((((.........)))))))))))))).)))))...)))))..(((((....))))).

Structure
-----------------     UUU     U              cag 
                 acuau   UGCGA GUGUUCCUAAUAUg   u
                 |||||   ||||| ||||||||||||||   a
                 uggua   acguu uacgaggguuauau   u
gacauauaacuauguuu     cgu     u              aaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 18282042-18282123 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from bta-mir-450a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-450a

Accession MIMAT0003834
Description Bos taurus bta-miR-450a mature miRNA
Sequence 6 - UUUUGCGAUGUGUUCCUAAUAU - 27
Evidence experimental
cloned [1]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90