Stem-loop bta-mir-299

Accession

MI0009787

Description

Bos taurus bta-mir-299 precursor miRNA

Literature search

16 open access papers mention bta-mir-299
(71 sentences)

Sequence

235980 reads, 113.0 reads per million, 308 experiments

aagaaaUGGUUUACCGUCCCACAUACAUucugaauaugUAUGUGGGACGGUAAACCGCUUcuu
(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))

Structure

     a                      uc 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGCAGGGUGUAUgua  a
     C                      ua 

Annotation confidence High

Genome context

21: 65914207-65914269 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from bta-mir-299

Mature bta-miR-299-5p

• Accession: MIMAT0060924
• Description: Bos taurus bta-miR-299-5p mature miRNA
• Sequence: 7 - UGGUUUACCGUCCCACAUACAU - 28
• Evidence: experimental ; Illumina [1]

Mature bta-miR-299-3p

• Accession: MIMAT0009274
• Description: Bos taurus bta-miR-299-3p mature miRNA
• Sequence: 39 - UAUGUGGGACGGUAAACCGCUU - 60
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125