Stem-loop bta-mir-218-1

Accession

MI0009780

Description

Bos taurus bta-mir-218-1 precursor miRNA

Literature search

6 open access papers mention bta-mir-218-1
(8 sentences)

Sequence

1273809 reads, 382.0 reads per million, 307 experiments

gugguuauguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUGguugccagguaugaguaAAACAUGGUUCCGUCAAGCACCAuggaacgucacgcagcuuucuaca
((((....((.(((.(((.((((((.(((((((((..((((((((..((((((....)).)))).))))))))..))))))))).)))))).))).))).))...)))).

Structure

-    uuau  a   a   u      U         CU        Gg    -  g 
 gugg    gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc ca g
 ||||    || ||| ||| |||||| |||||||||  ||||||||  |||| ||  
 cauc    cg cgc cug aagguA CACGAACUG  UUGGUACA  Aaug gu u
a    -uuu  a   a   c      C         CC        -A    a  a 

Annotation confidence Medium

Genome context

6: 40087130-40087239 [+]

Mature bta-miR-218-5p

• Accession: MIMAT0003798
• Description: Bos taurus bta-miR-218-5p mature miRNA
• Sequence: 25 - UUGUGCUUGAUCUAACCAUGUG - 46
• Evidence: experimental ; cloned [1,3-4]

Mature bta-miR-218-1-3p

• Accession: MIMAT0050837
• Description: Bos taurus bta-miR-218-1-3p mature miRNA
• Sequence: 64 - AAACAUGGUUCCGUCAAGCACCA - 86
• Evidence: experimental ; cloned [1,3-4]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125