Stem-loop rno-mir-138-2

Accession

MI0000911

Description

Rattus norvegicus rno-mir-138-2 precursor miRNA

Literature search

41 open access papers mention rno-mir-138-2
(184 sentences)

Sequence

1473041 reads, 1275 reads per million, 491 experiments

guugcugcAGCUGGUGUUGUGAAUCAGGCCGacgagcaacgcauccucuuacccgGCUAUUUCACGACACCAGGGUugcacc
..(((.((..(((((((((((((...(((((..(((.........))).....)))))..))))))))))))).)).)))..

Structure

gu   u  AG             UCA     ---ac   caa 
  ugc gc  CUGGUGUUGUGAA   GGCCG     gag   c
  ||| ||  |||||||||||||   |||||     |||   g
  acg UG  GACCACAGCACUU   UCGgc     cuc   c
cc   u  -G             -UA     ccauu   cua 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

chr19: 11149748-11149829 [-]

Mature rno-miR-138-5p

• Accession: MIMAT0000844
• Description: Rattus norvegicus rno-miR-138-5p mature miRNA
• Sequence: 9 - AGCUGGUGUUGUGAAUCAGGCCG - 31
• Evidence: experimental ; cloned [1-4], Northern [1], SOLiD [5]

Mature rno-miR-138-2-3p

• Accession: MIMAT0017127
• Description: Rattus norvegicus rno-miR-138-2-3p mature miRNA
• Sequence: 56 - GCUAUUUCACGACACCAGGGU - 76
• Evidence: experimental ; SOLiD [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68


5. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714