Stem-loop bta-mir-381

Accession

MI0009821

Description

Bos taurus bta-mir-381 precursor miRNA

Literature search

35 open access papers mention bta-mir-381
(133 sentences)

Sequence

869649 reads, 322.0 reads per million, 311 experiments

uacucagagCGAGGUUGCCCUUUGUAUAUUCgguuuuuugauguagaaUAUACAAGGGCAAGCUCUCUGUgagua
((((((.((.(((.((((((((.((((((((..............)))))))))))))))).))).)).))))))

Structure

      g  C   G        U        gguuuu 
uacuca ag GAG UUGCCCUU GUAUAUUC      u
|||||| || ||| |||||||| ||||||||       
augagU UC CUC AACGGGAA CAUAUaag      u
      G  U   G        -        auguag 

Annotation confidence High

Genome context

21: 65933708-65933782 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from bta-mir-381

Mature bta-miR-381-5p

• Accession: MIMAT0061011
• Description: Bos taurus bta-miR-381-5p mature miRNA
• Sequence: 10 - CGAGGUUGCCCUUUGUAUAUUC - 31
• Evidence: experimental ; Array [3], qRT-PCR [3]

Mature bta-miR-381-3p

• Accession: MIMAT0009307
• Description: Bos taurus bta-miR-381-3p mature miRNA
• Sequence: 49 - UAUACAAGGGCAAGCUCUCUGU - 70
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125