Stem-loop bta-mir-144

Accession

MI0009744

Description

Bos taurus bta-mir-144 precursor miRNA

Literature search

7 open access papers mention bta-mir-144
(19 sentences)

Sequence

1320 reads, 30 reads per million, 64 experiments

gggcccugacugggauaucaucauauacuguaaguuugcaacgagacacUACAGUAUAGAUGAUGUACUAGuccgggugcuccc
(.((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))).)....

Structure

---- g    u      g        a         -a    gc 
    g gccc gacugg auaucauc uauacugua  guuu  a
    | |||| |||||| |||||||| |||||||||  ||||   
    c uggg cuGAUC UGUAGUAG AUAUGACAU  caga  a
cccu g    c      A        -         ca    gc 

Annotation confidence High

Genome context

chr19: 20923025-20923108 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-144

Mature bta-miR-144

• Accession: MIMAT0009234
• Description: Bos taurus bta-miR-144 mature miRNA
• Sequence: 50 - UACAGUAUAGAUGAUGUACUAG - 71
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125