Stem-loop bta-mir-144

Accession

MI0009744

Description

Bos taurus bta-mir-144 precursor miRNA

Literature search

92 open access papers mention bta-mir-144
(529 sentences)

Sequence

324523 reads, 78.0 reads per million, 310 experiments

gggcccugacugGGAUAUCAUCAUAUACUGUAAGUUugcaacgagacacUACAGUAUAGAUGAUGUACUAGuccgggugcuccc
(.((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))).)....

Structure

---- g    u      G        A         -A    gc 
    g gccc gacugG AUAUCAUC UAUACUGUA  GUUu  a
    | |||| |||||| |||||||| |||||||||  ||||   
    c uggg cuGAUC UGUAGUAG AUAUGACAU  caga  a
cccu g    c      A        -         ca    gc 

Annotation confidence High

Genome context

19: 20238687-20238770 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-144

Mature bta-miR-144-5p

• Accession: MIMAT0060986
• Description: Bos taurus bta-miR-144-5p mature miRNA
• Sequence: 13 - GGAUAUCAUCAUAUACUGUAAGUU - 36
• Evidence: experimental ; cloned [3]

Mature bta-miR-144-3p

• Accession: MIMAT0009234
• Description: Bos taurus bta-miR-144-3p mature miRNA
• Sequence: 50 - UACAGUAUAGAUGAUGUACUAG - 71
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125