miRBase entry: bta-mir-2284x

Stem-loop bta-mir-2284x


Accession
MI0014499
Description
Bos taurus bta-mir-2284x precursor miRNA
Gene family
MIPF0000747; mir-2284

Literature search
17 open access papers mention bta-mir-2284x
(46 sentences)

Sequence

158129 reads, 3263 reads per million, 77 experiments
ggauuuaguauuggguuggcUGAAAAGUUCGUUCGGGUUUUuccauaagaacucaaauaaacuuuuuggccaacccaguaauaacacugaugcacc
.(..(((((((((((((((((((((((((.(((.((((((((....)))))))).))).))))))))))))))))))))......)))))..)...

Structure
--g au     ------                    C   C        c 
   g  uuagu      auuggguuggcUGAAAAGUU GUU GGGUUUUu c
   |  |||||      |||||||||||||||||||| ||| ||||||||  
   c  aguca      ugacccaaccgguuuuucaa uaa cucaagaa a
cca gu     caauaa                    a   a        u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Jin et al. predicted this miRNA bioinformatically in [1], and validated its expression by qPCR in [2].

Genome context
chr1: 3605102-3605197 [-]

Database links

Mature bta-miR-2284x

Accession MIMAT0017395
Description Bos taurus bta-miR-2284x mature miRNA
Sequence 21 - UGAAAAGUUCGUUCGGGUUUU - 41
Evidence experimental
qPCR [2], Illumina [3]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  2. PubMed ID: 20423511
    Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development
    Jin W, Dodson MV, Moore SS, Basarab JA, Guan LL
    BMC Mol Biol (2010) 11:29

  3. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026