Stem-loop bta-mir-2284x

Accession

MI0014499

Description

Bos taurus bta-mir-2284x precursor miRNA

Literature search

18 open access papers mention bta-mir-2284x
(44 sentences)

Sequence

2410710 reads, 1078.0 reads per million, 317 experiments

ggauuuaguauuggguuggcUGAAAAGUUCGUUCGGGUUUUUccauaagaacucaaauaaacUUUUUGGCCAACCCAGUAAuaacacugaugcacc
.(..(((((((((((((((((((((((((.(((.((((((((....)))))))).))).))))))))))))))))))))......)))))..)...

Structure

--g au     ------                    C   C        c 
   g  uuagu      auuggguuggcUGAAAAGUU GUU GGGUUUUU c
   |  |||||      |||||||||||||||||||| ||| ||||||||  
   c  aguca      UGACCCAACCGGUUUUUcaa uaa cucaagaa a
cca gu     caauAA                    a   a        u 

Annotation confidence Medium

Comments

Jin et al. predicted this miRNA bioinformatically in [1], and validated its expression by qPCR in [2].

Genome context

1: 4315515-4315610 [-]

Mature bta-miR-2284x-5p

• Accession: MIMAT0017395
• Description: Bos taurus bta-miR-2284x-5p mature miRNA
• Sequence: 21 - UGAAAAGUUCGUUCGGGUUUUU - 42
• Evidence: experimental ; qPCR [2], Illumina [3]

Mature bta-miR-2284x-3p

• Accession: MIMAT0050962
• Description: Bos taurus bta-miR-2284x-3p mature miRNA
• Sequence: 63 - UUUUUGGCCAACCCAGUAA - 81
• Evidence: experimental ; qPCR [2], Illumina [3]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 20423511
   Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development
   Jin W, Dodson MV, Moore SS, Basarab JA, Guan LL
   BMC Mol Biol (2010) 11:29


3. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026