Stem-loop bta-mir-429

Accession

MI0009829

Description

Bos taurus bta-mir-429 precursor miRNA mir-8

Gene
family

RF00241; mir-8

Literature search

81 open access papers mention bta-mir-429
(238 sentences)

Sequence

688981 reads, 403.0 reads per million, 294 experiments

agccugccgaugggcGUCUUACCAGACACGGUUAGAUcugguccuucugucUAAUACUGUCUGGUAAUGCCGUccauccccggc
.(((.(..((((((((.(((((((((((..(((((((..((....)).)))))))..)))))))))).).))))))))..))))

Structure

a   u cc        U -          CG       cu  u 
 gcc g  gaugggcG C UUACCAGACA  GUUAGAU  gg c
 ||| |  |||||||| | ||||||||||  |||||||  ||  
 cgg c  cuaccUGC G AAUGGUCUGU  UAAUcug  cu c
-   - cc        C U          CA       -u  u 

Annotation confidence High

Genome context

16: 51321445-51321528 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-429

Mature bta-miR-429-5p

• Accession: MIMAT0050863
• Description: Bos taurus bta-miR-429-5p mature miRNA
• Sequence: 16 - GUCUUACCAGACACGGUUAGAU - 37
• Evidence: experimental ; cloned [3]

Mature bta-miR-429-3p

• Accession: MIMAT0009315
• Description: Bos taurus bta-miR-429-3p mature miRNA
• Sequence: 52 - UAAUACUGUCUGGUAAUGCCGU - 73
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125