Stem-loop rno-mir-9b-1

Accession

MI0015430

Description

Rattus norvegicus rno-mir-9b-1 precursor miRNA

Literature search

72 open access papers mention rno-mir-9b-1
(619 sentences)

Sequence

985 reads, 3.0 reads per million, 82 experiments

gcgcaguguaugggguuauuuuuacuUUCGGUUAUCUAGCUUUAUGAagacuccacaccacucAUACAGCUAGAUAACCAAAGAuaacaaccaaccccgccuccuggc
((.(((....(((((((....(((((((.((((((((((((.(((((..............))))).)))))))))))))))).))).....)))))))....)))))

Structure

  g   ugua       -auuu   -    C            U     agacuc 
gc cag    ugggguu     uua cuUU GGUUAUCUAGCU UAUGA      c
|| |||    |||||||     ||| |||| |||||||||||| |||||       
cg guc    gccccaa     aau GAAA CCAAUAGAUCGA AUAcu      a
  -   cucc       ccaac   A    -            C     caccac 

Annotation confidence High

Genome context

chr2: 187582790-187582897 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-9b-1

Mature rno-miR-9b-5p

• Accession: MIMAT0017835
• Description: Rattus norvegicus rno-miR-9b-5p mature miRNA
• Sequence: 27 - UUCGGUUAUCUAGCUUUAUGA - 47
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-9b-3p

• Accession: MIMAT0017836
• Description: Rattus norvegicus rno-miR-9b-3p mature miRNA
• Sequence: 64 - AUACAGCUAGAUAACCAAAGA - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249