Stem-loop bta-mir-551b

Accession

MI0009864

Description

Bos taurus bta-mir-551b precursor miRNA

Literature search

4 open access papers mention bta-mir-551b
(21 sentences)

Sequence

2858 reads, 9.0 reads per million, 185 experiments

agagaaguucuccuggccuaaGAAAUCAAGCGUGGGUGAGACCUggugcagaacaggaaGGCGACCCAUACUUGGUUUCAGaggcugugagaaua
......((((((.((((((..(((((((((.((((((....((((........))))......)))))).)))))))))..)))))).)))))).

Structure

agagaa      c      aa         C      --GAGA    gug 
      guucuc uggccu  GAAAUCAAG GUGGGU      CCUg   c
      |||||| ||||||  ||||||||| ||||||      ||||    
      uaagag gucgga  CUUUGGUUC UACCCA      ggac   a
-----a      u      GA         A      GCGGaa    aag 

Annotation confidence High

Genome context

1: 98873841-98873935 [-]

Mature bta-miR-551b-5p

• Accession: MIMAT0050880
• Description: Bos taurus bta-miR-551b-5p mature miRNA
• Sequence: 22 - GAAAUCAAGCGUGGGUGAGACCU - 44
• Evidence: experimental ; cloned [3]

Mature bta-miR-551b-3p

• Accession: MIMAT0009348
• Description: Bos taurus bta-miR-551b-3p mature miRNA
• Sequence: 60 - GGCGACCCAUACUUGGUUUCAG - 81
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125