Stem-loop bta-mir-133a-1

Accession

MI0009733

Description

Bos taurus bta-mir-133a-1 precursor miRNA

Literature search

29 open access papers mention bta-mir-133a-1
(104 sentences)

Sequence

7338495 reads, 5195.0 reads per million, 312 experiments

ugggaccgaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaacuguucgauggaUUUGGUCCCCUUCAACCAGCUGuagcugcgcauugau
........(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))...

Structure

ugggaccg     uuu    a       AA  U  A        aacug 
        aaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
        |||||   |||| |||||||  || || ||||||||      
        uuacg   cgau UCGACCA  UU CC UGGUUUag     u
-----uag     cgu    G       AC  C  C        guagc 

Annotation confidence High

Genome context

13: 54735656-54735750 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-133a-1

Mature bta-miR-133a-5p

• Accession: MIMAT0060982
• Description: Bos taurus bta-miR-133a-5p mature miRNA
• Sequence: 22 - AGCUGGUAAAAUGGAACCAAAU - 43
• Evidence: experimental ; cloned [3]

Mature bta-miR-133a-3p

• Accession: MIMAT0009225
• Description: Bos taurus bta-miR-133a-3p mature miRNA
• Sequence: 59 - UUUGGUCCCCUUCAACCAGCUG - 80
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125