Stem-loop bta-mir-16a

Accession

MI0009753

Description

Bos taurus bta-mir-16a precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

25 open access papers mention bta-mir-16a
(61 sentences)

Sequence

42557 reads, 574 reads per million, 74 experiments

gucagcagugccuUAGCAGCACGUAAAUAUUGGUGuuaagauucuaaaauuaucuccaguauuaacugugcugcugaaguaagguuggc
((((((..(((.((((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))).)))..))))))

Structure

      ag   c          -  A        U u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
cgguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 

Annotation confidence High

Genome context

chr12: 19660386-19660474 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-16a

Mature bta-miR-16a

• Accession: MIMAT0009242
• Description: Bos taurus bta-miR-16a mature miRNA
• Sequence: 14 - UAGCAGCACGUAAAUAUUGGUG - 35
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125