Stem-loop bta-mir-133b

Accession

MI0009734

Description

Bos taurus bta-mir-133b precursor miRNA

Literature search

91 open access papers mention bta-mir-133b
(463 sentences)

Sequence

3443784 reads, 2419.0 reads per million, 312 experiments

cccugcucugGCUGGUCAAACGGAACCAAGUccgucuuccugagaggUUUGGUCCCCUUCAACCAGCUAcagcagggcuggcaa
(((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).))))))).......

Structure

-------       c        CA  C  A      U  g    c 
       cccugcu ugGCUGGU  AA GG ACCAAG cc ucuu  
       ||||||| ||||||||  || || |||||| || |||| c
       gggacga AUCGACCA  UU CC UGGUUU gg agag  
aacgguc       c        AC  C  C      -  -    u 

Annotation confidence High

Genome context

23: 24571304-24571387 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-133b

Mature bta-miR-133b-5p

• Accession: MIMAT0050813
• Description: Bos taurus bta-miR-133b-5p mature miRNA
• Sequence: 11 - GCUGGUCAAACGGAACCAAGU - 31
• Evidence: experimental ; cloned [3]

Mature bta-miR-133b-3p

• Accession: MIMAT0009226
• Description: Bos taurus bta-miR-133b-3p mature miRNA
• Sequence: 48 - UUUGGUCCCCUUCAACCAGCUA - 69
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125