Stem-loop bta-mir-3431

Accession

MI0014498

Description

Bos taurus bta-mir-3431 precursor miRNA mir-3431

Gene
family

RF03614; mir-3431

Literature search

5 open access papers mention bta-mir-3431
(10 sentences)

Sequence

6503 reads, 50 reads per million, 68 experiments

auacccaaugaaugcgaaaaCCUCAGUCAGCCUUGUGGAUGUauguucugcagaccugacaucuagaggacugacugaaauuuucacuuucagcuaa
........((((.(.(((((..((((((((((((.(((((((..(.((....)).)..))))))))))).))))))))..))))).).)))).....

Structure

auacccaa    u c     CC        -    G       au u  u 
        ugaa g gaaaa  UCAGUCAG CCUU UGGAUGU  g uc g
        |||| | |||||  |||||||| |||| |||||||  | ||  
        acuu c cuuuu  agucaguc ggag aucuaca  c ag c
---aaucg    u a     aa        a    -       gu c  a 

Annotation confidence High

Comments

Jin et al. predicted this miRNA bioinformatically in [1], and validated its expression by qPCR in [2].

Genome context

chrX: 34879430-34879526 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-3431

Mature bta-miR-3431

• Accession: MIMAT0017394
• Description: Bos taurus bta-miR-3431 mature miRNA
• Sequence: 21 - CCUCAGUCAGCCUUGUGGAUGU - 42
• Evidence: experimental ; qPCR [2], Illumina [3]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 20423511
   Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development
   Jin W, Dodson MV, Moore SS, Basarab JA, Guan LL
   BMC Mol Biol (2010) 11:29


3. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026