Stem-loop bta-mir-376c

Accession

MI0010446

Description

Bos taurus bta-mir-376c precursor miRNA

Literature search

11 open access papers mention bta-mir-376c
(75 sentences)

Sequence

78814 reads, 31.0 reads per million, 293 experiments

uuugguauuuaaaaGGUGGAUAUUCCUUCUAUGUUUauguuauuugugguuaAACAUAGAGGAAAUUCCACGUUuucaguaucaaa
.((((((((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).)))))))).

Structure

u        u    G     UA     U         uguua 
 uugguauu aaaa GUGGA  UUCCU CUAUGUUUa     u
 |||||||| |||| |||||  ||||| |||||||||     u
 aacuauga uuUU CACCU  AAGGA GAUACAAau     u
a        c    G     UA     -         uggug 

Annotation confidence High

Genome context

21: 65928948-65929033 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from bta-mir-376c

Mature bta-miR-376c-5p

• Accession: MIMAT0009947
• Description: Bos taurus bta-miR-376c-5p mature miRNA
• Sequence: 15 - GGUGGAUAUUCCUUCUAUGUUU - 36
• Evidence: experimental ; cloned [2]

Mature bta-miR-376c-3p

• Accession: MIMAT0061034
• Description: Bos taurus bta-miR-376c-3p mature miRNA
• Sequence: 53 - AACAUAGAGGAAAUUCCACGUU - 74
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90