Stem-loop bta-mir-339a

Accession

MI0009806

Description

Bos taurus bta-mir-339a precursor miRNA mir-339

Gene
family

RF00763; mir-339

Literature search

6 open access papers mention bta-mir-339a
(22 sentences)

Sequence

2655481 reads, 1052.0 reads per million, 321 experiments

ggggcagccgcugUCCCUGUCCUCCAGGAGCUCACuugguccggccgugCGCUCCUCGAGGCCAGAGCCCgugucugc
...((((.(((.(.(.(((.((((.((((((.(((..(((...)))))).)))))).)))).))).).).))).))))

Structure

ggg    c   u U C   U    C      U   uu   c 
   gcag cgc g C CUG CCUC AGGAGC CAC  ggu  
   |||| ||| | | ||| |||| |||||| |||  ||| c
   cguc gug C G GAC GGAG UCCUCG gug  ccg  
---    u   C C A   C    C      C   --   g 

Annotation confidence High

Genome context

25: 41736134-41736211 [+]

Mature bta-miR-339a-5p

• Accession: MIMAT0009293
• Description: Bos taurus bta-miR-339a-5p mature miRNA
• Sequence: 14 - UCCCUGUCCUCCAGGAGCUCAC - 35
• Evidence: experimental ; Array [3], qRT-PCR [3], cloned [4]

Mature bta-miR-339a-3p

• Accession: MIMAT0050854
• Description: Bos taurus bta-miR-339a-3p mature miRNA
• Sequence: 50 - CGCUCCUCGAGGCCAGAGCCC - 70
• Evidence: experimental ; Array [3], qRT-PCR [3], cloned [4]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125