Stem-loop bta-mir-1-2

Accession

MI0009718

Description

Bos taurus bta-mir-1-2 precursor miRNA

Literature search

29 open access papers mention bta-mir-1-2
(133 sentences)

Sequence

15077 reads, 62 reads per million, 65 experiments

accuacucagaguacauacuucuuuauguacccauaugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuugguaggc
.((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).)))))).

Structure

a      c                     ac     ug aca 
 ccuacu agaguacauacuucuuuaugu  ccaua  a   u
 |||||| |||||||||||||||||||||  |||||  |    
 ggaugg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
c      u                     -A     cg aac 

Annotation confidence Low

Genome context

chr24: 34928847-34928931 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-1-2

Mature bta-miR-1

• Accession: MIMAT0009214
• Description: Bos taurus bta-miR-1 mature miRNA
• Sequence: 53 - UGGAAUGUAAAGAAGUAUGUAU - 74
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125