miRBase entry: bta-mir-223

Stem-loop bta-mir-223


Accession
MI0009782
Description
Bos taurus bta-mir-223 precursor miRNA mir-223
Gene
family?
RF00664; mir-223

Literature search
234 open access papers mention bta-mir-223
(1124 sentences)

Sequence

441586 reads, 307.0 reads per million, 319 experiments
cccagccuccugcagugccaugcucCGUGUAUUUGACAAGCUGAGUUGGAcacuccauguaguagUGUCAGUUUGUCAAAUACCCCAAGuguggcauaugccuagcag
....((.....(((((((((((((..(.((((((((((((((((.....((((.....)).))....)))))))))))))))).)..)))))))))).)))...))..

Structure
ccca  cuccu   -          cC U                GUUGG  -  u 
    gc     gca gugccaugcu  G GUAUUUGACAAGCUGA     Ac ac c
    ||     ||| ||||||||||  | ||||||||||||||||     || || c
    cg     cgu uacgguguGA  C CAUAAACUGUUUGACU     ug ug a
--ga  --auc   a          AC C                -GUga  a  u 


Annotation confidence High
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Genome context
X: 94562822-94562929 [-]

Database links

Mature bta-miR-223-5p

Accession MIMAT0060998
Description Bos taurus bta-miR-223-5p mature miRNA
Sequence 26 - CGUGUAUUUGACAAGCUGAGUUGGA - 50
Evidence experimental
Array [3], qRT-PCR [3], cloned [4]

Mature bta-miR-223-3p

Accession MIMAT0009270
Description Bos taurus bta-miR-223-3p mature miRNA
Sequence 66 - UGUCAGUUUGUCAAAUACCCCAAG - 89
Evidence experimental
Array [3], qRT-PCR [3], cloned [4]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125