Stem-loop rno-mir-193b

Accession

MI0030355

Description

Rattus norvegicus rno-mir-193b precursor miRNA

Literature search

87 open access papers mention rno-mir-193b
(246 sentences)

Sequence

47722 reads, 54.0 reads per million, 497 experiments

gugggcccagaauCGGGGUUUUGAGGGCGAGAUGAguuuguguuuuauccAACUGGCCCACAAAGUCCCGCUUuuggggucau
((((.(((((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).))))))).))))

Structure

    g       u          A    G  A  A  uug 
gugg cccagaa CGGGGUUUUG GGGC AG UG gu   u
|||| ||||||| |||||||||| |||| || || ||   g
uacu ggguuUU GCCCUGAAAC CCCG UC Ac ua   u
    g       C          A    G  A  c  uuu 

Annotation confidence High

Genome context

chr14: 30331049-30331131 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-193b

Mature rno-miR-193b-5p

• Accession: MIMAT0035733
• Description: Rattus norvegicus rno-miR-193b-5p mature miRNA
• Sequence: 14 - CGGGGUUUUGAGGGCGAGAUGA - 35
• Evidence: experimental ; RNAseq-metaanalysis [1]

Mature rno-miR-193b-3p

• Accession: MIMAT0035734
• Description: Rattus norvegicus rno-miR-193b-3p mature miRNA
• Sequence: 51 - AACUGGCCCACAAAGUCCCGCUU - 73
• Evidence: experimental ; RNAseq-metaanalysis [1]

References

1. PubMed ID: 23329697
   Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters
   "Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A"
   "RNA (2013) 19:365-379