Stem-loop bta-mir-433

Accession

MI0009832

Description

Bos taurus bta-mir-433 precursor miRNA

Literature search

3 open access papers mention bta-mir-433
(92 sentences)

Sequence

195 reads, 10 reads per million, 49 experiments

uggccggggagaaguacggugagccugucauuguucagagaggcuagauccuccuuguugagaaggAUCAUGAUGGGCUCCUCGGUGUucuccagguagcggcaccacaccaugaaggcagccc
..(((..((((((...(((.(((((((((((...............((((((.(((...))).))))))))))))))))).)))...)))))).)))...(((.((..........))..))).

Structure

-------------------------ug   gg      gua   u           uguucagagaggcua      c   g 
                           gcc  ggagaa   cgg gagccugucau               gauccu cuu  
                           |||  ||||||   ||| |||||||||||               |||||| ||| u
                           ugg  ccucuU   GCU CUCGGGUAGUA               CUAgga gag  
cccgacggaaguaccacaccacggcga   -a      GUG   C           ---------------      a   u 

Annotation confidence Not enough data

Genome context

chr21: 67707406-67707529 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-433

Mature bta-miR-433

• Accession: MIMAT0009318
• Description: Bos taurus bta-miR-433 mature miRNA
• Sequence: 67 - AUCAUGAUGGGCUCCUCGGUGU - 88
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125