Stem-loop bta-mir-433

Accession

MI0009832

Description

Bos taurus bta-mir-433 precursor miRNA

Literature search

26 open access papers mention bta-mir-433
(288 sentences)

Sequence

97197 reads, 56.0 reads per million, 290 experiments

gccggggagaagUACGGUGAGCCUGUCAUUGUUcagagaggcuagauccuccuuguugagaaggAUCAUGAUGGGCUCCUCGGUGUucuccagguagcggca
((((.((((((...(((.(((((((((((...............((((((.(((...))).))))))))))))))))).)))...))))))......)))).

Structure

-    -----g      gUA   U           UGUUcagagaggcua      c   g 
 gccg      ggagaa   CGG GAGCCUGUCAU               gauccu cuu  
 ||||      ||||||   ||| |||||||||||               |||||| ||| u
 cggc      ccucuU   GCU CUCGGGUAGUA               CUAgga gag  
a    gaugga      GUG   C           ---------------      a   u 

Annotation confidence High

Genome context

21: 65779595-65779696 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-433

Mature bta-miR-433-5p

• Accession: MIMAT0050865
• Description: Bos taurus bta-miR-433-5p mature miRNA
• Sequence: 13 - UACGGUGAGCCUGUCAUUGUU - 33
• Evidence: experimental ; cloned [2]

Mature bta-miR-433-3p

• Accession: MIMAT0009318
• Description: Bos taurus bta-miR-433-3p mature miRNA
• Sequence: 65 - AUCAUGAUGGGCUCCUCGGUGU - 86
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125