Stem-loop bta-mir-323a

Accession

MI0009797

Description

Bos taurus bta-mir-323a precursor miRNA

Literature search

12 open access papers mention bta-mir-323a
(41 sentences)

Sequence

48090 reads, 44.0 reads per million, 282 experiments

uugguacuuggagagAGGUGGUCCGUGGCGCGUUCGcuuuauuuauggcGCACAUUACACGGUCGACCUCUuugcaguaucuaauc
..((((((.(.((((((((.(.(((((..(.((.((((........)))).)).)..))))).).)))))))).))))))).....

Structure

---uu      u g        G U     GC C  U    uua 
     gguacu g agagAGGU G CCGUG  G GU CGcu   u
     |||||| | |||||||| | |||||  | || ||||    
     cuauga c uuUCUCCA C GGCAC  U CA Gcgg   u
cuaau      - g        G U     AU A  C    uau 

Annotation confidence High

Genome context

21: 65916105-65916190 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from bta-mir-323a

Mature bta-miR-323a-5p

• Accession: MIMAT0050848
• Description: Bos taurus bta-miR-323a-5p mature miRNA
• Sequence: 16 - AGGUGGUCCGUGGCGCGUUCG - 36
• Evidence: experimental ; cloned [3]

Mature bta-miR-323a-3p

• Accession: MIMAT0009284
• Description: Bos taurus bta-miR-323a-3p mature miRNA
• Sequence: 50 - GCACAUUACACGGUCGACCUCU - 71
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125