Stem-loop mmu-mir-204

Accession

MI0000247

Symbol

MGI: Mir204

Description

Mus musculus mmu-mir-204 precursor miRNA mir-204

Gene
family

RF00646; mir-204

Literature search

84 open access papers mention mmu-mir-204
(852 sentences)

Sequence

26943 reads, 107 reads per million, 68 experiments

uggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggagGCUGGGAAGGCAAAGGGACGUuca
(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))

Structure

     U          A     U    gagaau 
uggac UCCCUUUGUC UCCUA GCCU      a
||||| |||||||||| ||||| ||||      u
acuUG AGGGAAACGG AGGGU CGga      a
     C          A     -    ggaagu 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context

chr19: 22750605-22750672 [+]

Mature mmu-miR-204-5p

• Accession: MIMAT0000237
• Description: Mus musculus mmu-miR-204-5p mature miRNA
• Sequence: 6 - UUCCCUUUGUCAUCCUAUGCCU - 27
• Evidence: experimental ; cloned [1-3], Illumina [4-5]

Mature mmu-miR-204-3p

• Accession: MIMAT0017002
• Description: Mus musculus mmu-miR-204-3p mature miRNA
• Sequence: 45 - GCUGGGAAGGCAAAGGGACGU - 65
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12554859
   New microRNAs from mouse and human
   "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
   "RNA (2003) 9:175-179


3. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


4. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


5. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009