Stem-loop bta-mir-138-2

Accession

MI0005029

Description

Bos taurus bta-mir-138-2 precursor miRNA mir-138

Gene
family

RF00671; mir-138

Literature search

8 open access papers mention bta-mir-138-2
(16 sentences)

Sequence

3228 reads, 47 reads per million, 66 experiments

guugcugcAGCUGGUGUUGUGAAUCAGGCCGacgagcagcgcauccucuuacccggcuauuucacgacaccaggguugcauca
(.(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))).).

Structure

- u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg ug  gaccacagcacuu   ucggc   uuc uc  a
a u   u  -g             -ua     cca   -  cu 

Annotation confidence High

Genome context

chr18: 25049218-25049300 [+]

Mature bta-miR-138

• Accession: MIMAT0003813
• Description: Bos taurus bta-miR-138 mature miRNA
• Sequence: 9 - AGCUGGUGUUGUGAAUCAGGCCG - 31
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677