Stem-loop bta-mir-1388

Accession

MI0012206

Description

Bos taurus bta-mir-1388 precursor miRNA

Literature search

8 open access papers mention bta-mir-1388
(14 sentences)

Sequence

10592 reads, 113 reads per million, 67 experiments

ccugggcggugccuucAGGACUGUCCAACCUGAGAAUggugagcauccagggacaAUCUCAGGUUUGUCAGCCCGCAaggugccguccccuc
...((((((((((((..((.(((.(.(((((((((.((...............)).))))))))).).))).))..))))))))))))....

Structure

-ccu            cA  A   U C         A  gugagc 
    gggcggugccuu  GG CUG C AACCUGAGA Ug      a
    ||||||||||||  || ||| | ||||||||| ||      u
    ccugccguggaA  CC GAC G UUGGACUCU ac      c
cucc            CG  C   U U         A  agggac 

Annotation confidence High

Genome context

chr13: 54595416-54595507 [+]

Mature bta-miR-1388-5p

• Accession: MIMAT0013590
• Description: Bos taurus bta-miR-1388-5p mature miRNA
• Sequence: 17 - AGGACUGUCCAACCUGAGAAU - 37
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bta-miR-1388-3p

• Accession: MIMAT0013591
• Description: Bos taurus bta-miR-1388-3p mature miRNA
• Sequence: 56 - AUCUCAGGUUUGUCAGCCCGCA - 77
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026