miRBase entry: bta-mir-9-1

Stem-loop bta-mir-9-1


Accession
MI0009912
Description
Bos taurus bta-mir-9-1 precursor miRNA

Literature search
18 open access papers mention bta-mir-9-1
(35 sentences)

Sequence

11436 reads, 179 reads per million, 66 experiments
ggaggcccguuucucUCUUUGGUUAUCUAGCUGUAUGagugccacagagccgucAUAAAGCUAGAUAACCGaaaguagaaaugacucuca
.((((..(((((((((.(((((((((((((((.(((((..((......))..))))).))))))))))))))))).)))))))..)))).

Structure
g    cc       -  C               G     gu  ca 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGa  gc  c
 ||||  ||||||| || ||||||||||||||| |||||  ||   
 cucu  guaaaga ga aaGCCAAUAGAUCGA AUAcu  cg  a
a    ca       u  -               A     gc  ag 


Annotation confidence High
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Genome context
chr21: 21326580-21326669 [+]

Database links

Mature bta-miR-9-3p

Accession MIMAT0012549
Description Bos taurus bta-miR-9-3p mature miRNA
Sequence 55 - AUAAAGCUAGAUAACCG - 71
Evidence experimental
cloned [4]

Mature bta-miR-9

Accession MIMAT0009389
Description Bos taurus bta-miR-9 mature miRNA
Sequence 16 - UCUUUGGUUAUCUAGCUGUAUG - 37
Evidence

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125