Stem-loop rno-mir-122

Accession

MI0000891

Description

Rattus norvegicus rno-mir-122 precursor miRNA

Literature search

71 open access papers mention rno-mir-122
(698 sentences)

Sequence

1243408 reads, 3864 reads per million, 293 experiments

ccuuagcagagcucUGGAGUGUGACAAUGGUGUUUGuguccaaaacaucaAACGCCAUCAUCACACUAAacagcuacugcuaggc
.((((((((((((.(..(((((((..(((((((((((((.....))).))))))))))..)))))))..).)))).)))))))).

Structure

c        -    c GG       CA          -   c 
 cuuagcag agcu U  AGUGUGA  AUGGUGUUUG ugu c
 |||||||| |||| |  |||||||  |||||||||| ||| a
 ggaucguc ucga a  UCACACU  UACCGCAAac aca a
c        a    c AA       AC          u   a 

Annotation confidence High

Genome context

chr18: 60755285-60755369 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-122

Mature rno-miR-122-5p

• Accession: MIMAT0000827
• Description: Rattus norvegicus rno-miR-122-5p mature miRNA
• Sequence: 15 - UGGAGUGUGACAAUGGUGUUUG - 36
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-122-3p

• Accession: MIMAT0017116
• Description: Rattus norvegicus rno-miR-122-3p mature miRNA
• Sequence: 51 - AACGCCAUCAUCACACUAA - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249