Stem-loop bta-mir-130a

Accession

MI0009730

Description

Bos taurus bta-mir-130a precursor miRNA

Literature search

87 open access papers mention bta-mir-130a
(353 sentences)

Sequence

302430 reads, 242.0 reads per million, 310 experiments

ugcugcgggccggaGCUCUUUUCACAUUGUGCUACUgucugcgccugucacuagCAGUGCAAUGUUAAAAGGGCAUuggcugugcagcg
.((((((((((((.((((((((.((((((((((.(((...((....))...))).)))))))))).)))))))).)))))).)))))).

Structure

u      -      a        C          A   ucu  g 
 gcugcg ggccgg GCUCUUUU ACAUUGUGCU CUg   gc c
 |||||| |||||| |||||||| |||||||||| |||   ||  
 cgacgu ucgguU CGGGAAAA UGUAACGUGA gau   ug c
g      g      A        U          C   cac  u 

Annotation confidence High

Genome context

15: 80888253-80888341 [+]

Mature bta-miR-130a-5p

• Accession: MIMAT0060980
• Description: Bos taurus bta-miR-130a-5p mature miRNA
• Sequence: 15 - GCUCUUUUCACAUUGUGCUACU - 36
• Evidence: experimental ; cloned [3]

Mature bta-miR-130a-3p

• Accession: MIMAT0009223
• Description: Bos taurus bta-miR-130a-3p mature miRNA
• Sequence: 55 - CAGUGCAAUGUUAAAAGGGCAU - 76
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125