Stem-loop bta-mir-143

Accession

MI0009743

Description

Bos taurus bta-mir-143 precursor miRNA mir-143

Gene
family

RF00683; mir-143

Literature search

267 open access papers mention bta-mir-143
(1097 sentences)

Sequence

328514610 reads, 140836.0 reads per million, 320 experiments

gcguccugucucccagccugaGGUGCAGUGCUGCAUCUCUGGucaguugggagucUGAGAUGAAGCACUGUAGCUCgggaagggagaaguuguucugcagc
........((((((..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..)))))).(((((...)))))

Structure

------gcguccug      ag      G         G      U  -  ag 
              ucuccc  ccugaG UGCAGUGCU CAUCUC GG uc  u
              ||||||  |||||| ||||||||| |||||| || ||   
              agaggg  gggCUC AUGUCACGA GUAGAG cu ag  u
cgacgucuuguuga      aa      G         A      U  g  gg 

Annotation confidence High

Genome context

7: 60812121-60812221 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-143

Mature bta-miR-143-5p

• Accession: MIMAT0050819
• Description: Bos taurus bta-miR-143-5p mature miRNA
• Sequence: 22 - GGUGCAGUGCUGCAUCUCUGG - 42
• Evidence: experimental ; cloned [3]

Mature bta-miR-143-3p

• Accession: MIMAT0009233
• Description: Bos taurus bta-miR-143-3p mature miRNA
• Sequence: 56 - UGAGAUGAAGCACUGUAGCUC - 76
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125