Stem-loop bta-mir-133a-2

Accession

MI0009732

Description

Bos taurus bta-mir-133a-2 precursor miRNA

Literature search

30 open access papers mention bta-mir-133a-2
(107 sentences)

Sequence

7339023 reads, 5195.0 reads per million, 312 experiments

caaugcuuugcuagAGCUGGUAAAAUGGAACCAAAUcgccucuucaauggaUUUGGUCCCCUUCAACCAGCUGuagcuaugcauuga
((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).

Structure

-      uuu    g       AA  U  A        gccuc 
 caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 

Annotation confidence High

Genome context

24: 34456691-34456777 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-133a-2

Mature bta-miR-133a-5p

• Accession: MIMAT0060982
• Description: Bos taurus bta-miR-133a-5p mature miRNA
• Sequence: 15 - AGCUGGUAAAAUGGAACCAAAU - 36
• Evidence: experimental ; cloned [3]

Mature bta-miR-133a-3p

• Accession: MIMAT0009225
• Description: Bos taurus bta-miR-133a-3p mature miRNA
• Sequence: 52 - UUUGGUCCCCUUCAACCAGCUG - 73
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125