Stem-loop bta-mir-100

Accession

MI0009720

Description

Bos taurus bta-mir-100 precursor miRNA

Literature search

113 open access papers mention bta-mir-100
(646 sentences)

Sequence

11958002 reads, 4588.0 reads per million, 321 experiments

ccuguugccacaAACCCGUAGAUCCGAACUUGUGgugguagugcacaCAAGCUUGUGUCUAUAGGUAUGugucugu
........((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).....

Structure

ccuguugc    A   C      C   A      g  gu 
        caca ACC GUAGAU CGA CUUGUG ug  a
        |||| ||| |||||| ||| |||||| ||   
        guGU UGG UAUCUG GUU GAACac ac  g
---ugucu    A   A      U   C      -  gu 

Annotation confidence High

Genome context

15: 32818528-32818603 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-100

Mature bta-miR-100-5p

• Accession: MIMAT0009215
• Description: Bos taurus bta-miR-100-5p mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAACUUGUG - 34
• Evidence: experimental ; cloned [3]

Mature bta-miR-100-3p

• Accession: MIMAT0060977
• Description: Bos taurus bta-miR-100-3p mature miRNA
• Sequence: 48 - CAAGCUUGUGUCUAUAGGUAUG - 69
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125