Stem-loop bta-mir-197

Accession

MI0009769

Description

Bos taurus bta-mir-197 precursor miRNA

Literature search

39 open access papers mention bta-mir-197
(172 sentences)

Sequence

396308 reads, 145.0 reads per million, 320 experiments

ggggcugugcCGGGUAGAGAGGGCAGUGGGAGGUaagagcucuucacccUUCACCACCUUCUCCACCCAGCagggccagca
..((((.(((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).))).))))....

Structure

--gg    g   C    A       CA     A   -   a 
    ggcu ugc GGGU GAGAGGG  GUGGG GGU aag g
    |||| ||| |||| |||||||  ||||| ||| |||  
    ccgg aCG CCCA CUCUUCC  CACUU cca uuc c
acga    g   A    C       AC     c   c   u 

Annotation confidence High

Genome context

3: 33850276-33850356 [-]

Mature bta-miR-197-5p

• Accession: MIMAT0050829
• Description: Bos taurus bta-miR-197-5p mature miRNA
• Sequence: 11 - CGGGUAGAGAGGGCAGUGGGAGGU - 34
• Evidence: experimental ; cloned [3]

Mature bta-miR-197-3p

• Accession: MIMAT0009257
• Description: Bos taurus bta-miR-197-3p mature miRNA
• Sequence: 50 - UUCACCACCUUCUCCACCCAGC - 71
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125